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Variation data in the tomato (S. lycopersicum) genome

(a) Find the Solyc02g084570.3 gene in tomato and go to its Location tab. Can you see the variation track?

(b) Zoom in around the last exon of this gene. What are the different types of variants seen in that region? What are the locations of any splice region variants mapped in the region?

(a) Search for Solyc02g084570.3 and click on the Location link in the results page. The variation track is shown at the bottom of the region.

(b) Zoom in around the last exon of this gene by drawing a box in the respective region. Please note the gene is on the reverse strand, so the last exon will be on the left hand side of that image.

The variation legend is shown at the bottom of the page, telling you what the colours mean.

The types of variants seen in that region are 3’ UTR variants, missense variants, synonymous variants and splice region variants.

Splice region variants are shown in orange. Click on the variants to get additional information on that variant including location.

The variant is found at 2:48285640-48285641.