Export structural variants

You can use BioMart to query variants, not just genes. (Make sure you use the right Datasets.)

Export the study accession, source name, chromosome, sequence region start and end (in bp) of cow (Bos taurus) structural variations (SV) on chromosome 5, starting at 1,000,000 and ending at 4,000,000.

Choose Ensembl Variation and Cow Structural Variants _. Filters: _Region: Chromosome 5, Base pair start: 1000000, Base pair end: 4000000

Count shows 22 structural variants.

Attributes: Structural Variation (SV) Information: DGVa Study Accession and Source Name Structural Variation (SV) Location: Chromosome/scaffold name, Chromosome/scaffold position start (bp) and Chromosome/scaffold position start (bp) end (bp).